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Second round, clean up http:// links with {{ site.url }}

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Luca Beltrame 2015-05-16 12:27:23 +02:00
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_posts/2007-11-07-buggy-bioinformatics-software.markdown
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@ -21,7 +21,7 @@ As people who read my science-related posts know already, I'm not a big fan of {
I use TMeV mostly because I didn't find any other implementation of the hierarchical clustering algorithm with support trees. However, I've stumbled upon a very annoying bug in the most recent version. Normally I use average linkage clustering and as the distance metric I employ the Pearson's correlation, and with gene and sample bootstrapping: with certain files this makes TMeV report errors at random during the iterations.
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[![What a meaningful error…](http://www.dennogumi.org/images/2007/11/tmev.thumbnail.png)](http://www.dennogumi.org/images/2007/11/tmev.png)What you see on the left is the "error" that TMeV gives. As you can see, it is all but informative. Digging a bit, it shows that Java throws an ArrayIndexOutOfBoundsException, but I wonder how, since this happens with different data files that have nothing in common at all.
[![What a meaningful error…]({{ site.url }}/images/2007/11/tmev.thumbnail.png)]({{ site.url }}/images/2007/11/tmev.png)What you see on the left is the "error" that TMeV gives. As you can see, it is all but informative. Digging a bit, it shows that Java throws an ArrayIndexOutOfBoundsException, but I wonder how, since this happens with different data files that have nothing in common at all.
Since I don't want to pass for someone who just whines, I contacted the MeV developers and offered to give also example files, but I've got no response at all. Luckily, the older version of MeV (3.1) is still around and works.